Transcript | popgenie.org

Populus trichocarpa gene model Potri.011G066200.1
8

Basic Information
Sequence
Functional Information
Microarray Probes
Expression Overview
Gene Family
Publications
Community Annotation

Locus:	Potri.011G066200
Transcript name:	Potri.011G066200.1
Protein name:	27003267_peptide
PAC Transcript ID :	27003267
Chromosome:	Chr11
Start position:	6083335
End position:	6084666
Synonyms:	POPTR_0011s07370;
Description:
Best BLAST Aspen:	Potra009964g26454.1 Potrs038837g24873.1
Best BLAST ATG:	AT1G78830.1
Other transcripts at this locus:
Map Detail Image:

Legend: 5'UTR CDS 3'UTR

Genomic Sequence (+ strand) upstream: downstream:

>Chr11:6083335-6084666[1332 nucleotides] 
ATGTCTCGGTTTTCATCTTCAATATCTCATTCCTTCAAGATTTTCTTCTTTTTCTTCAATTTTTCCTTCTTAGCCTATGCCACTGTCCCCTCCTCCAAGACTTTCAAATACATCAATCAAGGTGAATTTGGGGAATATAGTGTTGAATACTTGGCAGATTACCGTGTCTTGCCCCTTTCTACATTTCCCTTTCAACTTTGCTTCTACAACACCACCCCAAATGCTTACACCCTCGGACTACGCATGGGCCATCGTCGGTCTGAGTCCATAATGCGCTGGGTCTGGGACGCCAATCGTGGTAAGCCAGTTCATGAAAATGCAACCCTAAGCTTCAAACGAGACGGGAACCTAATCCTGACTGATTTTGATGGCACTATAGCATGGCAAACTGGCACTGCAAACAAGGGTGTGGTAGGTCTCAACTTGCTTCCAGATGGTAATTTGGTTTTGTATGATCAAAGGGGTAAATTTATTTGGCAGAGTTTTGATCACCCAACTGACACACTACTGGTAGGTCAAAACTTGCGTTCCAGTGGCCCAAATAGGCTTGTTAGTCGCGTCTCTAACATGGATGGCTCACTAGGGCCTTACAGCTTTGTAATGGAGCAACGGTATTGGGCCTTGTACTATAAGGTTAAAAATTCACCAAAACCTTTGCTTTATTACAAGTCCGATGAGTTTGGTAATGGCCAAGGTTCATTGGCACATCTCAATTTTTACTGCAAACCCGAGTACGAACAAGCCTATGCTTTTGAGGTAGGATTTACTTACGACATGAACAACTCTCCTAGCTCTGGCACTTACATTCTGACTAGGCCAAAATACAATAGCACATACTCAATGCTCCGTTTGGAATCTGATGGTAACTTGAAAATTTATACTTACAATGAAAATGTGGATTGGGGAGCTTGGGACTTGACATTCAAGCTCTTTGATAGAGATAGTGATCTCGAAATTAGTGAGTGCAAGTTACCACAAAGGTGTGGTTCACTAGGAGTTTGTGAGGACAACCAATGTGTGGCTTGCCCTAGGCCGCAAGGATTTTTGGGGTGGAGCAAGAGCTGCGCACCACCAGTGCTGCCACCGTGCAAAGGCGGAGCCAACGTGGATTACTACAAAGTCGTGGGTGTTGAGCATTTCTTGAACGGGTATAATGAAGGAGAGGGCCCCATGAAGTTGGTTGATTGCAGGAACAAGTGCAACAATGATTGTGGGTGCTTGGGATTTTTCTACAAAGAGGAGTCTTCCAAGTGTTTGTTGGCTCCTGTGCTTGGCACTCTGGTCGGTGTTTCCAGTCCGTCCCATGTTGGCTTTATCAAAATGTCCAAATAG

CDS sequence:

>Potri.011G066200.1[1332 nucleotides] 
ATGTCTCGGTTTTCATCTTCAATATCTCATTCCTTCAAGATTTTCTTCTTTTTCTTCAATTTTTCCTTCTTAGCCTATGCCACTGTCCCCTCCTCCAAGACTTTCAAATACATCAATCAAGGTGAATTTGGGGAATATAGTGTTGAATACTTGGCAGATTACCGTGTCTTGCCCCTTTCTACATTTCCCTTTCAACTTTGCTTCTACAACACCACCCCAAATGCTTACACCCTCGGACTACGCATGGGCCATCGTCGGTCTGAGTCCATAATGCGCTGGGTCTGGGACGCCAATCGTGGTAAGCCAGTTCATGAAAATGCAACCCTAAGCTTCAAACGAGACGGGAACCTAATCCTGACTGATTTTGATGGCACTATAGCATGGCAAACTGGCACTGCAAACAAGGGTGTGGTAGGTCTCAACTTGCTTCCAGATGGTAATTTGGTTTTGTATGATCAAAGGGGTAAATTTATTTGGCAGAGTTTTGATCACCCAACTGACACACTACTGGTAGGTCAAAACTTGCGTTCCAGTGGCCCAAATAGGCTTGTTAGTCGCGTCTCTAACATGGATGGCTCACTAGGGCCTTACAGCTTTGTAATGGAGCAACGGTATTGGGCCTTGTACTATAAGGTTAAAAATTCACCAAAACCTTTGCTTTATTACAAGTCCGATGAGTTTGGTAATGGCCAAGGTTCATTGGCACATCTCAATTTTTACTGCAAACCCGAGTACGAACAAGCCTATGCTTTTGAGGTAGGATTTACTTACGACATGAACAACTCTCCTAGCTCTGGCACTTACATTCTGACTAGGCCAAAATACAATAGCACATACTCAATGCTCCGTTTGGAATCTGATGGTAACTTGAAAATTTATACTTACAATGAAAATGTGGATTGGGGAGCTTGGGACTTGACATTCAAGCTCTTTGATAGAGATAGTGATCTCGAAATTAGTGAGTGCAAGTTACCACAAAGGTGTGGTTCACTAGGAGTTTGTGAGGACAACCAATGTGTGGCTTGCCCTAGGCCGCAAGGATTTTTGGGGTGGAGCAAGAGCTGCGCACCACCAGTGCTGCCACCGTGCAAAGGCGGAGCCAACGTGGATTACTACAAAGTCGTGGGTGTTGAGCATTTCTTGAACGGGTATAATGAAGGAGAGGGCCCCATGAAGTTGGTTGATTGCAGGAACAAGTGCAACAATGATTGTGGGTGCTTGGGATTTTTCTACAAAGAGGAGTCTTCCAAGTGTTTGTTGGCTCCTGTGCTTGGCACTCTGGTCGGTGTTTCCAGTCCGTCCCATGTTGGCTTTATCAAAATGTCCAAATAG

Transcript sequence:

>Potri.011G066200.1[1332 nucleotides] 
ATGTCTCGGTTTTCATCTTCAATATCTCATTCCTTCAAGATTTTCTTCTTTTTCTTCAATTTTTCCTTCTTAGCCTATGCCACTGTCCCCTCCTCCAAGACTTTCAAATACATCAATCAAGGTGAATTTGGGGAATATAGTGTTGAATACTTGGCAGATTACCGTGTCTTGCCCCTTTCTACATTTCCCTTTCAACTTTGCTTCTACAACACCACCCCAAATGCTTACACCCTCGGACTACGCATGGGCCATCGTCGGTCTGAGTCCATAATGCGCTGGGTCTGGGACGCCAATCGTGGTAAGCCAGTTCATGAAAATGCAACCCTAAGCTTCAAACGAGACGGGAACCTAATCCTGACTGATTTTGATGGCACTATAGCATGGCAAACTGGCACTGCAAACAAGGGTGTGGTAGGTCTCAACTTGCTTCCAGATGGTAATTTGGTTTTGTATGATCAAAGGGGTAAATTTATTTGGCAGAGTTTTGATCACCCAACTGACACACTACTGGTAGGTCAAAACTTGCGTTCCAGTGGCCCAAATAGGCTTGTTAGTCGCGTCTCTAACATGGATGGCTCACTAGGGCCTTACAGCTTTGTAATGGAGCAACGGTATTGGGCCTTGTACTATAAGGTTAAAAATTCACCAAAACCTTTGCTTTATTACAAGTCCGATGAGTTTGGTAATGGCCAAGGTTCATTGGCACATCTCAATTTTTACTGCAAACCCGAGTACGAACAAGCCTATGCTTTTGAGGTAGGATTTACTTACGACATGAACAACTCTCCTAGCTCTGGCACTTACATTCTGACTAGGCCAAAATACAATAGCACATACTCAATGCTCCGTTTGGAATCTGATGGTAACTTGAAAATTTATACTTACAATGAAAATGTGGATTGGGGAGCTTGGGACTTGACATTCAAGCTCTTTGATAGAGATAGTGATCTCGAAATTAGTGAGTGCAAGTTACCACAAAGGTGTGGTTCACTAGGAGTTTGTGAGGACAACCAATGTGTGGCTTGCCCTAGGCCGCAAGGATTTTTGGGGTGGAGCAAGAGCTGCGCACCACCAGTGCTGCCACCGTGCAAAGGCGGAGCCAACGTGGATTACTACAAAGTCGTGGGTGTTGAGCATTTCTTGAACGGGTATAATGAAGGAGAGGGCCCCATGAAGTTGGTTGATTGCAGGAACAAGTGCAACAATGATTGTGGGTGCTTGGGATTTTTCTACAAAGAGGAGTCTTCCAAGTGTTTGTTGGCTCCTGTGCTTGGCACTCTGGTCGGTGTTTCCAGTCCGTCCCATGTTGGCTTTATCAAAATGTCCAAATAG

Protein sequence:

>Potri.011G066200.1[443 residues] 
MSRFSSSISHSFKIFFFFFNFSFLAYATVPSSKTFKYINQGEFGEYSVEYLADYRVLPLSTFPFQLCFYNTTPNAYTLGLRMGHRRSESIMRWVWDANRGKPVHENATLSFKRDGNLILTDFDGTIAWQTGTANKGVVGLNLLPDGNLVLYDQRGKFIWQSFDHPTDTLLVGQNLRSSGPNRLVSRVSNMDGSLGPYSFVMEQRYWALYYKVKNSPKPLLYYKSDEFGNGQGSLAHLNFYCKPEYEQAYAFEVGFTYDMNNSPSSGTYILTRPKYNSTYSMLRLESDGNLKIYTYNENVDWGAWDLTFKLFDRDSDLEISECKLPQRCGSLGVCEDNQCVACPRPQGFLGWSKSCAPPVLPPCKGGANVDYYKVVGVEHFLNGYNEGEGPMKLVDCRNKCNNDCGCLGFFYKEESSKCLLAPVLGTLVGVSSPSHVGFIKMSK

GO ID	Description
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PFAM ID
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PANTHER ID
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KO ID
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EC ID
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KOG ID
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Type	Probe Name
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Data generated by

PlantGenIE GeneLists

Species Name	Genes
Arabidopsis thaliana	AT1G78860; AT1G78850; AT1G78830; AT1G16905; AT1G78820;
Picea abies	MA_10426357g0020; MA_8460571g0010; MA_58982g0020;
Pinus taeda	PITA_000094036-RA;
Populus trichocarpa	Potri.011G110000; Potri.011G110500; Potri.011G110200; Potri.011G110300; Potri.001G391300; Potri.001G391200; Potri.011G066200; Potri.010G005900; Potri.010G008900; Potri.001G391000; Potri.004G057200;
Selaginella moellendorffii	SM00070G01750; SM00064G01280; SM00002G02420; SM00024G03150; SM00087G01760; SM00084G01220; SM00011G01420; SM00007G00970; SM00014G00960; SM00084G01230; SM00102G01470; SM00021G02220; SM00031G01530; SM00031G00820;
Vitis vinifera	VV12G03360; VV19G01860; VV12G03530;

No submitted publication available for this gene(Potri.011G066200).

Map Image:

Primary links

Populus trichocarpa gene model Potri.011G066200.1 8

Populus trichocarpa gene model Potri.011G066200.1
8