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Populus trichocarpa gene Potri.T111100
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Locus: Potri.T111100 
Transcript name:  Potri.T111100.1 
Protein name:  26993300_peptide 
PAC Transcript ID : 26993300 
Chromosome: scaffold_170 
Start position:  54869 
End position:  58270 
Synonyms:  POPTR_0016s04590; 
Description:   
Best BLAST Aspen:   
Best BLAST ATG:   
Other transcripts at this locus:  
Map Detail Image: 

 


Legend:      5'UTR          CDS          3'UTR               


Genomic Sequence (+ strand)        upstream:    downstream:    
>scaffold_170:54869-58270[3402 nucleotides] 
TCTCTCTCTCCCCGAACCCTGCCAGCTTTAGCTGCTTCTCCAGAAAGAAAACCCTTATCTGGGGGTGAGGGTTTATGCTCCTGTTTCTATATCTCTTGTCAGATTCAGGGCGTTAACTCTTTGAGTTCATTACCTAATTGGGATTTTCCAGCTCGTTTTTATTTGGATCTGAGATTTAAATCGATAATGGATACAAGAAAGAGAGGGAGACCTGACTTCGGCACTAATGGTTATGGTGGATTCAAGAAATCTAAGCAAGGTCAGTTCTTTCTCTTAATCTCAATATCCAGCAACTTAATTTCTTTAATTACTATCTGGGTTTTATGTGGTTCATTTTTGTTGTTGTTGTTTTAGTGATTTATTTATGCTTTTGATCATTTTATTATTTTTTTTTTCTGGATTTCTATGTCTTAGCTATTAAGAATTTGTTATCTGTAAGTGTTTCTTTAAGGAGAAACTTAGTCTCATACGTTCAAGGAAAAATCTACAATCCTTTGCTTGTTTTAAAATTTAGGTACACGTCAAGAATGGAACTTCTAATCCGAGGAAAAACTGGCTGATTGTTATCTTTGTTGTTTTGTTTTTTTTTCTTTCTAAGATGTAATTTATGGTTTTATATTCTTTTTAGAAAGTTTAAAGTATGGTGTCTTGGGGGTTAGCTGGTTAGGCTTTCATTTACATTGGTTGTAGCTGTAATTTGGCTTGCATGCATGCCTCACCTTTGTTGCTGTTTCACTGGTAGGAATTAACTTCATTAGCTTTGATTGTAGCTGTGATTTGCTTGCTTATCCCACCTCTTCTGCTCTTTTTTGAATGCTGGCATAGTATTGTCAGGCACTACCTCTAATGTCCTTGTTAAATAAAAAATTTTAACTGTCGTTTGTCGTTGAACATGCAAAATTTTAGTCTGGAGTGAAAAGCTATGCTGTAGGCACCGATATTGTAGCATTCATTTATTGGGTGAAAAGCTGCAAACAGAATACTTCAAACCATGCAAGCACTCAAATTAAATTATCCACAAACTTTAAGAACAGTTTCTCATTATCAAAAGATTGCCCTTTATTTGAGTAATATAATGTATTATATTAACCCAATCATCCTTCAATGACTTTGAGAGATTTTTGGTTTTTTCTCAAACTCACTTTTGTTACATATTTGTAAAATCACCAAACATAACTAACAATATACAGCTTCAAACACAAATACATTTGGCCAAACAAAAACCAAATCATCTCCAAGCATCAATTAAACATGCCCTGAACAAAGTGAAACTCGCAACAAAAACAACAACACCCATAAACTTCATTGGAGACTTTGGTTTACCAATGAAGTAAAAAAACGGTGACAGGGTTACCCATATAAGTGGATGCTGCATAAGGGTGAAAAATTTGTTGGAATGTAATTGTTAATGTACATCTCTCATTATGCCTTGTGCATTCTTTATGTTAGTTGGACAATTTTATTTAAAGAGCTTCAGTTTTTGTAGGGAATACTACTAGTATTAAACTTGGGAATATTCTAGAGTAAGCAGATTAAGAATCTGGAAATCTTTTAACTAAGAACAAGTAATTAATGTTTGTAACAGAAATGGACTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGGTTCAAATCTTCTCACCTAAATAAGTATCTTGAATTTCATCTTTTATCCTTTAATATTTAAAAGTTACTGTGAATTTTTATTTATTTTTTATTTCACAATATAAGTTATGTACTGCCCTAATGAAGTGGGTATTTAGCTGTTATACAGGTCCTTAATCATAACTGTGCTTTGTTCCGACAAAGTTAATTAATGGAATTTCATTAGAGACTTTGGTTTACTATTGAACTACAAAATAGATAATTGCTTGCTGGAATACAGTTGATGCTAAGACAGTTATTTGAAGATTGATATTATTTTTATACCAAGGAATGCCTTCTGGCTGTCCCTGCTTCTTTAACAACAGTAATATTTAACATTAGGTTCAGCTATTGAACCCGATTCCTGTTGATAAATGTGGAATCTGTTAAGATAAATCTCAGGTATGATGCCAGAAATTTTGAATAAAGGATTTTGCTGACATGGACTTGTATTACTATAGCAGCAAGTTCTATTTTTATAGATTTGTATCAGTTTGTGATCGCTATGTTATTAGTCATGCCACTGAATTTATGCTATGCTATCTTCTAGTCAATGATAAAGTTAACAGTTCGGATTCTTGTTACCTTAGCATGTCATCATGTTATGGAATCTTAGTTTAATTGCATCAGCTATTTCCCTTATTTCTGGTTATAACCGAATTTTGACATGGTATTTCATTTTTATAGGAGGTAGCGTGTTCTGCTTGCATTCCTGATATTTGGGGATGCGCTGTTATACAGCATTCATCATGTGAACCTGCATTATTATCAGAGTTAATTGCCTTTTGGTTATAGTGTGCAGTCGATAGTTAGAAGAATAAGCTTGTAGTCAAGCATTTCAATCTTTTTTAATTGTCAAGTGATAGTTGCAGGCCTTAATTGTTCAATTAGTATTTAGCTTTTAGATGAAGTACTTTTTTGACTGTTAAGCAGTATCATTTATTTTACTTTTATAAATGGTGGATTGGCTTGCAGAACTGATTTCTTCCTTTTCCTTGGTTATGCATTGGATTGCAGTACTGCTGGCTGTCCATTTGGCGAGAGCTGCCACTTTCTCCACCATGTTCCCGGTGGCTACAAGGCTGTGGCCCAGATGGTGAATCTGGGACCTACTGTCGCTTTACCGCCTGTCCCTAACAGCTCTGCTCCGTCTGCTGTTAAAAGCCGGCTATGCAAAAAATACAATAGTGCTGAAGGTTGCAAATTTGGTGATAAATGCCATTTTGCGCATGGCGAGTGGGAACTTGGCAAGGCTTTTGTTCCATCCCACAACGATCCTCATGCTGTTGGAAGTGTTCCAGGACATCTGGGTGGTCGGGTGGAGCCACCCCCACCTGGCCCTGCCACCAGCTTCGGTGTCTTTGCCACCACTACAAGAATCAGTGTAGATGCCTCCCTTGCTGGATCCATCATTGGTAAGGCTGGTGTGCATTCCAAGCAGATCTGCCGCCAAACAGGAATCAAGCTATCTATTAAGGATCATGAAACAAATCCAAATCTCAAGAACATTGAGCTAGAGGGGTCATTGGAACAGATTGCCCAAGCTAGTAAGATGGTAGAAGAGCTTGTGAGGGTGACTTCAGCAAATGCCGCTGCAAAATCCTCTGGGGGTCATGCCAACCCAGGAAGCAACTATAAGACTAAGTTGTGTGACAATTTTGCCAAAGGGTCTTGCACTTTTGGTCAAAGGTGCCATTTTGCTCATGGGGCTGCTGAATTGCGCAAGTCATCAATGTGA
   

CDS sequence:
>Potri.T111100.1[855 nucleotides] 
ATGGATACAAGAAAGAGAGGGAGACCTGACTTCGGCACTAATGGTTATGGTGGATTCAAGAAATCTAAGCAAGAAATGGACTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGTACTGCTGGCTGTCCATTTGGCGAGAGCTGCCACTTTCTCCACCATGTTCCCGGTGGCTACAAGGCTGTGGCCCAGATGGTGAATCTGGGACCTACTGTCGCTTTACCGCCTGTCCCTAACAGCTCTGCTCCGTCTGCTGTTAAAAGCCGGCTATGCAAAAAATACAATAGTGCTGAAGGTTGCAAATTTGGTGATAAATGCCATTTTGCGCATGGCGAGTGGGAACTTGGCAAGGCTTTTGTTCCATCCCACAACGATCCTCATGCTGTTGGAAGTGTTCCAGGACATCTGGGTGGTCGGGTGGAGCCACCCCCACCTGGCCCTGCCACCAGCTTCGGTGTCTTTGCCACCACTACAAGAATCAGTGTAGATGCCTCCCTTGCTGGATCCATCATTGGTAAGGCTGGTGTGCATTCCAAGCAGATCTGCCGCCAAACAGGAATCAAGCTATCTATTAAGGATCATGAAACAAATCCAAATCTCAAGAACATTGAGCTAGAGGGGTCATTGGAACAGATTGCCCAAGCTAGTAAGATGGTAGAAGAGCTTGTGAGGGTGACTTCAGCAAATGCCGCTGCAAAATCCTCTGGGGGTCATGCCAACCCAGGAAGCAACTATAAGACTAAGTTGTGTGACAATTTTGCCAAAGGGTCTTGCACTTTTGGTCAAAGGTGCCATTTTGCTCATGGGGCTGCTGAATTGCGCAAGTCATCAATGTGA
   

Transcript sequence:
>Potri.T111100.1[1041 nucleotides] 
TCTCTCTCTCCCCGAACCCTGCCAGCTTTAGCTGCTTCTCCAGAAAGAAAACCCTTATCTGGGGGTGAGGGTTTATGCTCCTGTTTCTATATCTCTTGTCAGATTCAGGGCGTTAACTCTTTGAGTTCATTACCTAATTGGGATTTTCCAGCTCGTTTTTATTTGGATCTGAGATTTAAATCGATAATGGATACAAGAAAGAGAGGGAGACCTGACTTCGGCACTAATGGTTATGGTGGATTCAAGAAATCTAAGCAAGAAATGGACTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGTACTGCTGGCTGTCCATTTGGCGAGAGCTGCCACTTTCTCCACCATGTTCCCGGTGGCTACAAGGCTGTGGCCCAGATGGTGAATCTGGGACCTACTGTCGCTTTACCGCCTGTCCCTAACAGCTCTGCTCCGTCTGCTGTTAAAAGCCGGCTATGCAAAAAATACAATAGTGCTGAAGGTTGCAAATTTGGTGATAAATGCCATTTTGCGCATGGCGAGTGGGAACTTGGCAAGGCTTTTGTTCCATCCCACAACGATCCTCATGCTGTTGGAAGTGTTCCAGGACATCTGGGTGGTCGGGTGGAGCCACCCCCACCTGGCCCTGCCACCAGCTTCGGTGTCTTTGCCACCACTACAAGAATCAGTGTAGATGCCTCCCTTGCTGGATCCATCATTGGTAAGGCTGGTGTGCATTCCAAGCAGATCTGCCGCCAAACAGGAATCAAGCTATCTATTAAGGATCATGAAACAAATCCAAATCTCAAGAACATTGAGCTAGAGGGGTCATTGGAACAGATTGCCCAAGCTAGTAAGATGGTAGAAGAGCTTGTGAGGGTGACTTCAGCAAATGCCGCTGCAAAATCCTCTGGGGGTCATGCCAACCCAGGAAGCAACTATAAGACTAAGTTGTGTGACAATTTTGCCAAAGGGTCTTGCACTTTTGGTCAAAGGTGCCATTTTGCTCATGGGGCTGCTGAATTGCGCAAGTCATCAATGTGA
   

Protein sequence:
>Potri.T111100.1[284 residues] 
MDTRKRGRPDFGTNGYGGFKKSKQEMDSLSTGVGSKSKPCTKFFSTAGCPFGESCHFLHHVPGGYKAVAQMVNLGPTVALPPVPNSSAPSAVKSRLCKKYNSAEGCKFGDKCHFAHGEWELGKAFVPSHNDPHAVGSVPGHLGGRVEPPPPGPATSFGVFATTTRISVDASLAGSIIGKAGVHSKQICRQTGIKLSIKDHETNPNLKNIELEGSLEQIAQASKMVEELVRVTSANAAAKSSGGHANPGSNYKTKLCDNFAKGSCTFGQRCHFAHGAAELRKSSM
   



GO ID Description
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PFAM ID
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PANTHER ID
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KO ID
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EC ID
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KOG ID
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PlantGenIE GeneLists

Species Name Genes
Amborella trichopodascaffold00022.187; scaffold00149.35; scaffold00269.3;
Arabidopsis thalianaAT5G06770; AT3G12130;
Oryza sativa ssp. japonicaOS04G57010; OS06G41384; OS02G10080;
Oryza sativa ssp. japonicaOL17G00170;
Physcomitrella patensPP00059G01660; PP00066G01040;
Picea abiesMA_159838g0010; MA_68032g0010; MA_1151g0010; MA_83924g0010; MA_8414656g0010;
Pinus taedaPITA_000059887-RA; PITA_000014089-RA; PITA_000014090-RA; PITA_000059827-RA; PITA_000005455-RA; PITA_000088084-RA; PITA_000031774-RA; PITA_000005456-RA; PITA_000032900-RA; PITA_000066266-RA; PITA_000087140-RA; PITA_000057922-RA;
Populus trichocarpaPotri.016G046600; Potri.001G013200; Potri.003G213200; Potri.T111100; Potri.006G191900;
Selaginella moellendorffiiSM00000G10060;
Vitis viniferaVV06G06800; VV08G09280; VV13G00710;
Zea maysZM02G01270; ZM10G25850; ZM04G38270; ZM06G13250; ZM09G15400; ZM01G39120; ZM06G11100;


Methods of the gene family analysis can be found here.

No submitted publication available for this gene(Potri.T111100).


Map Image: 
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