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Populus trichocarpa gene Potri.016G046600
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Locus: Potri.016G046600 
Transcript name:  Potri.016G046600.1 
Protein name:  27011919_peptide 
PAC Transcript ID : 27011919 
Chromosome: Chr16 
Start position:  2934205 
End position:  2938021 
Synonyms:  eugene3.00160401;POPTR_0016s04690; 
Description:  similar to KH domain-containing protein; zinc finger (CCCH type) family protein; [ co-ortholog (2of2) of At3g12130, At5g06770, ] 
Best BLAST Aspen:  Potra001132g09937.1 Potrs019283g21666.1  
Best BLAST ATG:   
Other transcripts at this locus: Potri.016G046600.2
 
Map Detail Image: 

 


Legend:      5'UTR          CDS          3'UTR               


Genomic Sequence (- strand)        upstream:    downstream:    
>Chr16:2934205-2938021[3817 nucleotides] 
TCTCTCTCTCTCTCTCTCTGAACCCTGCCAGCTTTAGCTGCTTCTCCAAAAGAAAACCCTTATCTGGGGGTGAGGGTTTATGCTCCTGTTTCTGTATCTCTTGTCAGATTCAGGGCGTTAACTCTTTGAGTTCATTACCTAATTGGGATTTTCCAGCTCGTTTTTATTTGGATCTGAGATTTAAATCGATGATGGATACAAGAAAGAGAGGGAGACCTGACTTCGGCACTAATGGTTATGGTGGATTCAAGAAATCTAAGCAAGGTCAGTTCTTTCTCTTAATTTCAATATCCAGCAACTTAATTTCTTTAATTACTATCTGGGTTTTATGTGGTTCATCTTTTTTTAGTGATTTATTTATGCTTTTGATCATTTTATTATTTTTGTCTGGATTTCTATGTCTTAGCTATTAAGAATTTGTTATCTGTACAGTGTTTATTTAAGGAGAAAGTTAGGCTCATACGTTCAAGGAAAAATCTATAATCCTTTGCTTGTTTTAAAATTTAGGTACACGTCAAGAATGGAACTTCTAATCCGAGGAAAAACTGGTTGATTGTTATCTTTGTTGTTTTGTTTTGTTTTGTTTTCTTTCTAAGATGTAATTTATGGTTTTATATTCTTGTTAGAAAGTTTAAAGTATGGTGTCTCGGGGGTTAGCTGGTTAGGCTTTCTTTTACATTGGTTGCAGCTGTAATTTGGCTTGCATGCATGCCTCACCTTTGTTGCTATTTCACTGGTAGGAATTAACCTCATTAGCTTTGATTTTAGTTGTGATTTGCTTGCTTACCCACCTCTTCTGCTCTTTTTTGAATGCTGGCATAGTATTGTCAGGCACTACCTCTAATGTCCTTGTTAAATAAAAAATTTAACTGTCGTTTGTCGTTGAACATGCAAAATTTTTGTCTGGAGAAACCTACATTTATTACAAGTTATACTGTAGGCACCGATATTGTAGCATTCATTTATTGGGTGAAAAGCTGCAAACAGAATACTTCAAACCATGCAAGCACTCAAATTAAATTATCCACAAACTTTAAGAACAGTTTCTCATTATCAAAAGATTGCCCGTTATTTGAGTAATATAATGTATTATATTAACCCAATCATCCTTCAATGACTTTGAGAGATTTTTGGTTTTTCCTCAAACTCACTTTTGTTACATATTTGTAAAATCACCAAACATAACTAACAATATACAGCTTCAAACACAAATACATTTGGCCAAACAAAAACCAAATCATCTCCAAGCATCAATTAAACATGCCCTGAACAAAGTGAAACTCACAACAAAAACAACAACACCCATAAACTTCATTGGAGACTTTGGTTTACTGATTAAGTAAAAAAACGGTGACAGGGTTACCCATATAAGTGGATGCTACATAAGGGTGAAAAATTTGTTGGAATGTAATTGTCAATGTACATCTCTCATTATGCCTTATGCATTCTTTATGTTAGTTGGACAATTTTATTTAAAGAGCTTCAGTTTTTGTAGGGAATACTACTAGTATTAAACTTGGGAATATTCTAGACTAAGCAGATTAAGAATCTGGAAATCTTTTAACTAAGAACAAGTAATTAATGCTTGTAACAGAAATGGACTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGGTTCAAATCTTCTCACCTAAATAAGTATCTTGAATTTCATCTTTTATCCTTTAATATTTAGAAGTTACTGTAAATTTTTATTTATTTTTTATTTCACAATATAAGTTATGTACTGCCCTAATGAAGTGGGTATTTAGCTGTTATACAGGTCCTTAAACATACCTGTGCTTTGTTCAAATGAAGTTAATTAATGGAATTTCATTAGAGACTTTGGTTTACTATTGAACTACAAAAAAGATAATTGCTTGCTGGAATACAGTTGACGCTAAGACAGTTATTTGAAGATTGATATTATTTTTATACCAAGGAATGCCTTCTGGCTGTCCCTGCTTCTCTAACAACAGTAATATTTAACATTAGCTTCAGCTATTGAACCCACTTCCTGTTGATAAATGTGGAATCTGTTAAGATAAATCTCAGGTATGATGCCAGAAATTTCGAATAAAGGATTTTGCTGACATGGACTTGTATTATTATAGCAGCAAGTTCTATTTTTATAGATTTGTATCAGTTTGTGATCGCTATGTTATTAGTCATGCCACTGAAGTTTATGCTATGCTATCTTCTAGTCAATGATAAAGTTAACAGTTTGGAGTCTTGTTACCTTAGCATGTCATCACGTTATGGAATCTCAGTTTAATTGCATCAGCTATTTCCCTTATTTCTGGTTATAACAGAATTTTGACATGGAATTTCATTTTTATAGGAGGTAGCGTGTTCTGCTTTCATTCCCGATATTTGGGGATGCTGTTATACAGCATTCATCATGTGAACCTGCATTATTATCAGAGTTAATTGCCTTTTGGTTATGTGTGCAGTCGATAGTTAGAAGAATAAGCTTGTAGTCAAGCATTTCAATCTTTTTTAATTGTCAAGTGATAGTTGCAGGCCTTAATTGTTCAATTAGTATTTAGCTTTTAGATGAAGTACTTTTTTGACTGTTAAGCAGTGTCATTTATTTTACTTTTATAAATGGTGGATTGACTTGCAGAACTGATTTCTTCTTTTTCCTTGGTTATGCATTGGATTGCAGTACTGCTGGCTGTCCATTTGGCGAGAGCTGCCACTTTCTCCACCATGTTCCCGGTGGCTACAAGGCTGTGGCCCAGATGGTGAATCTGGGACCTACTGTTGCTTTACCGCCTGTACCTAACAGCTCTGCTCCGTCTGCTGTTAAAAGCCGGCTATGCAAAAAATACAATAGTGCTGAAGGTTGCAAATTTGGTGATAAATGCCATTTTGCGCATGGCGAGTGGGAACTTGGCAAGGCTTTTGTTCCATCCCACAACGATCCTCATGCTGCTGGAAGTGTTCCAGGACGTCTGGGTGGTCGGGTGGAGCCACCCCCTCCTGGCCCCGCCACCAGCTTCGGTGTCTTTGCCACCACTACAAGAATCAGTGTAGATGCCTCCCTTGCTGGATCCATCATTGGTAAGGCTGGTGTGCATTCCAAGCAGATCTGCCGCCAAACAGGAATCAAGCTATCTATTAAGGATCATGAAACAAATCCAAATCTCAAGAACATTGAGCTAGAGGGGTCTTTGGAACAGATTGCCCAAGCTAGTAAGATGGTAGAAGAGCTTGTGAGGGTGACTTCAGCAAATGCCGCTGCAAAATCCTCTGGGGGTCATGCCAACCCAGGAAGCAACTATAAGACTAAGTTGTGTGACAATTTTGCCAAAGGGTCTTGCACTTTTGGTCAAAGGTGCCATTTTGCTCATGGGGCTGCTGAATTGCGCAAGTCATCAGTGTGAGTGGACTCTTCAGTTTTCCTAGTTAGTTTATGGCTTTAGCTGTCGTGCAGCCTTTGTATGAGTGAGCTCTATTTTAGTTCTGGCTGTGCAATGGTACCTAGCGAGAGAAAATTATGATCTTACTTTTTTGGGGCTTCTTGTATACTTTTTAGAACTATCATAGCTTTAGCTTCCAATCTTCCTCAATTTTATGTATCATACTCTGCCAGCTTGTCGATGCTGAACCTGGATTTATGTTTCCGAGTAGATAATAATAGGCTTGTCTAATTTGCTAGAAACCCTGGACTTTTGTATGTTATGACATTACTTTCTCAAAAGACTTGTATTGCAAACTGCAATTCTTCTGTTTCACACTCCAAAGCCTTCGAATTATTCAATGGCTATTTCTACCTGATCATTACCAGGTGC
   

CDS sequence:
>Potri.016G046600.1[858 nucleotides] 
ATGATGGATACAAGAAAGAGAGGGAGACCTGACTTCGGCACTAATGGTTATGGTGGATTCAAGAAATCTAAGCAAGAAATGGACTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGTACTGCTGGCTGTCCATTTGGCGAGAGCTGCCACTTTCTCCACCATGTTCCCGGTGGCTACAAGGCTGTGGCCCAGATGGTGAATCTGGGACCTACTGTTGCTTTACCGCCTGTACCTAACAGCTCTGCTCCGTCTGCTGTTAAAAGCCGGCTATGCAAAAAATACAATAGTGCTGAAGGTTGCAAATTTGGTGATAAATGCCATTTTGCGCATGGCGAGTGGGAACTTGGCAAGGCTTTTGTTCCATCCCACAACGATCCTCATGCTGCTGGAAGTGTTCCAGGACGTCTGGGTGGTCGGGTGGAGCCACCCCCTCCTGGCCCCGCCACCAGCTTCGGTGTCTTTGCCACCACTACAAGAATCAGTGTAGATGCCTCCCTTGCTGGATCCATCATTGGTAAGGCTGGTGTGCATTCCAAGCAGATCTGCCGCCAAACAGGAATCAAGCTATCTATTAAGGATCATGAAACAAATCCAAATCTCAAGAACATTGAGCTAGAGGGGTCTTTGGAACAGATTGCCCAAGCTAGTAAGATGGTAGAAGAGCTTGTGAGGGTGACTTCAGCAAATGCCGCTGCAAAATCCTCTGGGGGTCATGCCAACCCAGGAAGCAACTATAAGACTAAGTTGTGTGACAATTTTGCCAAAGGGTCTTGCACTTTTGGTCAAAGGTGCCATTTTGCTCATGGGGCTGCTGAATTGCGCAAGTCATCAGTGTGA
   

Transcript sequence:
>Potri.016G046600.1[1454 nucleotides] 
TCTCTCTCTCTCTCTCTCTGAACCCTGCCAGCTTTAGCTGCTTCTCCAAAAGAAAACCCTTATCTGGGGGTGAGGGTTTATGCTCCTGTTTCTGTATCTCTTGTCAGATTCAGGGCGTTAACTCTTTGAGTTCATTACCTAATTGGGATTTTCCAGCTCGTTTTTATTTGGATCTGAGATTTAAATCGATGATGGATACAAGAAAGAGAGGGAGACCTGACTTCGGCACTAATGGTTATGGTGGATTCAAGAAATCTAAGCAAGAAATGGACTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGTACTGCTGGCTGTCCATTTGGCGAGAGCTGCCACTTTCTCCACCATGTTCCCGGTGGCTACAAGGCTGTGGCCCAGATGGTGAATCTGGGACCTACTGTTGCTTTACCGCCTGTACCTAACAGCTCTGCTCCGTCTGCTGTTAAAAGCCGGCTATGCAAAAAATACAATAGTGCTGAAGGTTGCAAATTTGGTGATAAATGCCATTTTGCGCATGGCGAGTGGGAACTTGGCAAGGCTTTTGTTCCATCCCACAACGATCCTCATGCTGCTGGAAGTGTTCCAGGACGTCTGGGTGGTCGGGTGGAGCCACCCCCTCCTGGCCCCGCCACCAGCTTCGGTGTCTTTGCCACCACTACAAGAATCAGTGTAGATGCCTCCCTTGCTGGATCCATCATTGGTAAGGCTGGTGTGCATTCCAAGCAGATCTGCCGCCAAACAGGAATCAAGCTATCTATTAAGGATCATGAAACAAATCCAAATCTCAAGAACATTGAGCTAGAGGGGTCTTTGGAACAGATTGCCCAAGCTAGTAAGATGGTAGAAGAGCTTGTGAGGGTGACTTCAGCAAATGCCGCTGCAAAATCCTCTGGGGGTCATGCCAACCCAGGAAGCAACTATAAGACTAAGTTGTGTGACAATTTTGCCAAAGGGTCTTGCACTTTTGGTCAAAGGTGCCATTTTGCTCATGGGGCTGCTGAATTGCGCAAGTCATCAGTGTGAGTGGACTCTTCAGTTTTCCTAGTTAGTTTATGGCTTTAGCTGTCGTGCAGCCTTTGTATGAGTGAGCTCTATTTTAGTTCTGGCTGTGCAATGGTACCTAGCGAGAGAAAATTATGATCTTACTTTTTTGGGGCTTCTTGTATACTTTTTAGAACTATCATAGCTTTAGCTTCCAATCTTCCTCAATTTTATGTATCATACTCTGCCAGCTTGTCGATGCTGAACCTGGATTTATGTTTCCGAGTAGATAATAATAGGCTTGTCTAATTTGCTAGAAACCCTGGACTTTTGTATGTTATGACATTACTTTCTCAAAAGACTTGTATTGCAAACTGCAATTCTTCTGTTTCACACTCCAAAGCCTTCGAATTATTCAATGGCTATTTCTACCTGATCATTACCAGGTGC
   

Protein sequence:
>Potri.016G046600.1[285 residues] 
MMDTRKRGRPDFGTNGYGGFKKSKQEMDSLSTGVGSKSKPCTKFFSTAGCPFGESCHFLHHVPGGYKAVAQMVNLGPTVALPPVPNSSAPSAVKSRLCKKYNSAEGCKFGDKCHFAHGEWELGKAFVPSHNDPHAAGSVPGRLGGRVEPPPPGPATSFGVFATTTRISVDASLAGSIIGKAGVHSKQICRQTGIKLSIKDHETNPNLKNIELEGSLEQIAQASKMVEELVRVTSANAAAKSSGGHANPGSNYKTKLCDNFAKGSCTFGQRCHFAHGAAELRKSSV
   



GO ID Description
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PFAM ID
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PANTHER ID
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KO ID
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EC ID
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KOG ID
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PlantGenIE GeneLists

Species Name Genes
Amborella trichopodascaffold00022.187; scaffold00149.35; scaffold00269.3;
Arabidopsis thalianaAT5G06770; AT3G12130;
Oryza sativa ssp. japonicaOS04G57010; OS06G41384; OS02G10080;
Oryza sativa ssp. japonicaOL17G00170;
Physcomitrella patensPP00059G01660; PP00066G01040;
Picea abiesMA_159838g0010; MA_68032g0010; MA_1151g0010; MA_83924g0010; MA_8414656g0010;
Pinus taedaPITA_000059887-RA; PITA_000014089-RA; PITA_000014090-RA; PITA_000059827-RA; PITA_000005455-RA; PITA_000088084-RA; PITA_000031774-RA; PITA_000005456-RA; PITA_000032900-RA; PITA_000066266-RA; PITA_000087140-RA; PITA_000057922-RA;
Populus trichocarpaPotri.016G046600; Potri.001G013200; Potri.003G213200; Potri.T111100; Potri.006G191900;
Selaginella moellendorffiiSM00000G10060;
Vitis viniferaVV06G06800; VV08G09280; VV13G00710;
Zea maysZM02G01270; ZM10G25850; ZM04G38270; ZM06G13250; ZM09G15400; ZM01G39120; ZM06G11100;


Methods of the gene family analysis can be found here.

No submitted publication available for this gene(Potri.016G046600).


Map Image: 
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