Gene | popgenie.org

Populus trichocarpa gene Potri.013G115800
19

Basic Information
Sequence
Functional Information
Expression Overview
Gene Family
Publications
Community Annotation

Locus:	Potri.013G115800
Transcript name:	Potri.013G115800.1
Protein name:	26994016_peptide
PAC Transcript ID :	26994016
Chromosome:	Chr13
Start position:	12941227
End position:	12944199
Synonyms:	POPTR_0013s12010;
Description:
Best BLAST Aspen:	Potrs009074g13756.1
Best BLAST ATG:
Other transcripts at this locus:
Map Detail Image:

Legend: 5'UTR CDS 3'UTR

Genomic Sequence (+ strand) upstream: downstream:

>Chr13:12941227-12944199[2973 nucleotides] 
TACGCAATGAATTTTCTCAAGGTTCTAAACCAATTTTTCCCTTGGTTTTTACTTTTCTTTGTTTTGTCTTTATTTTCTTGGAAAATCGAGATAGTCCAACATTAGACATGGGAAAATCCTCACTTCTTTTGCATTTATAAGACATCGAGAAATCAACTAACCACTTGCTCAGCCTCAATTGTGCCCACACAAAAATAAAAAATATAATGAACTTCTGCTTTCTTCTCCTCCTCCAGCTTCCTCTCCTTCTCGTCTTCACGACTACTTCCACAGCAAACATACCACCAGGCTCCTCTCTTTATGCCTCCAACACAAGCCAAACCTGGTCGTCTCCAAACAACACTTTCTTTCTAGGCTTTACCCAAGTGGATCCCACTTCCTACACCGTTTCCATCTCCCATAGTACTGCTGGAGTTTCCATCTGGACAACTGGCAATGTTGTTGCTGGCACTGCCTCTGCAGCTGTCATTGACTACGGTGTAGAATTCCAGTTCCTCCGCAACGGAAATCTCCGTCTCATCAACGGTTCAGGTGCCCCCGTGTGGACCTCCAACACTGGCAACCTTGGTGTCACTTCTGCTTCACTTGATGACACTGGAAACCTGGTACTGAAAGCCGGCAGTATCAATGTCTGGTCCAGTTTTGAAAACCCAACCGACACTCTTGTCCCGTCACAGAATTTAACTGTAAACCAAACTTTGCGATCAGGGGTTTACTCTTTCCGGCTTCTAAGCAGTGGAAATATGAGCTTGACATGGAACGACAGTGTTGTGTACTGGAATCAAGGCTTGAGTTCTGCTTTGAAGTTGACTTCTCCAACCTTGCAGTTGAAGTCAAATGGGATTTTAACTCTTTTAGATGCTGGTTCGCAGATGTCTGTTGCTTTTGGCAATGATTATGGAGAAGGGGGTGAGGTAATGAGATTTTTGAGGTTAGGTAGCGATGGGAATTTGAGAATGTATAGTGGTGGAACTACAACTATGACATGGGCTGCTTTAGCAGATCAGTGTCAGGTTTATGGATACTGTGGAAACATGGGGATCTGTAGTTACAACGAGTCAAGTTTGAGTCCGATTTGCAAATGCCCATCTCTGAATTTTGAGGCTGTGGATGTGAATGATAGTAGAAAAGGGTGTAAGAGAAAAGTGGAGGTTGCGGATTGTGCAGGGAACGTAACAATGCTGGAGTTAAAGCAGACTAAATTTCTTACTTTCCAGGCTCAGCAAATTGTTACCATTGGGATAACAGCTTGCAGAGTGAATTGTTTATCAAGCACTTCTTGCATGGCTTGCACTTCTACATCAGACACATATGTACTATATTGTTACATGAAAAACACACCTGATTTTGTTAGTGGATATCAGGGTCCAGTGCTTCTTAGTACTTCTTATATTAAGGTTTGTGGACCAGTGCAACCAAATCCTTTGCCTTCTGACCAGATTGGTGGAGATAAAAAGTTCCGGGAATCGCGGGGTTGGAAAGTTGGTGTCTTGGTTACAGGCACTATTTGGGGTTTGGCTGCTTTAGTGGGTTTGTTTTGGTGGTTTTGTTGCAAAAATAGTCCCAAATTTGGAGGTGTGTGGGCTCAGTATACACTTCTTGAATATGCCTCAGGTGCTCCCGTTCAGTTTTCATACAAGGACCTGCATCGCTGGACGCAGGGGTTTAAGCATAAACTTGGAGCAGGAGGGTTTGGAGCTGTTTATAGAGGAGTTCTTGCTAACAGAACAGTAGTTGCAGCAAAGCAACTTGAGGGAATTGAACAAGGCGAGAGACAGTTTCGGATGGAGGTTGCAACTATAAGCAGTACTCACCATTTGAATCTGGTTAGATTGATTGGCTTTTGCTCCGAAGGGCGTCACAGGCTTTTAGTATACGAGTTCATGAAAAATGGTTCTTTGGATCATTTCCTGTTCTCGACCGAAGATCAGTCAGGGAAATTATTGAATTGGAAGCGCAGGTTCAACATTGCTCTTGGGACTGCGAGAGGAATCACATATCTTCACGAGGAATGTCGAGATTGCATTGTTCATTGTGATATAAAGCCAGAAAACATTCTCTTGGATGCGAATTTCAATGCCAAGGTGTCTGATTTTGGCCTAGCGAAGCTTATAAGCACAAAGGATCAAAGATACCGGTCCTTGACTACCATTAGAGGCACTAGAGGATATTTGGCACCAGAATGGCTAGCAAACCTCCCAATAACATCAAAATCTGATCTTTACAGTTATGGTATGGTTTTGTTGGAGATTGTGAGTGGGAGGAGGAACTTTGAAGTCTCAGCAGAAATCAATCAAAAGAGGTTCTCAGAGTGGGCTTATGAAGAGTTTGAGAAAGGTAATGTGGAGACAATTGTTGACAAGAGACTTGCTGATCAGGGTGTGGACATGGAACAAGTGATGAGAGCTGTTCAGGTTAGCTTTTGGTGCATTCAGGAGCATCCCTCTCAAAGACCAACAATGGGAAAAGTAGTGCAAATGCTTGAGGGAATTATAGAGATTGCAAGACCACCAGCACCAAAGGCATTGATGAAAGGCTCTACTAGTGGAACAAGTACGAATTTGAGCAGTAAAGATAGTGCTCAGTCTACTTGTGAAGCCTCAGCTCCACCACCCTCTTCATCTTCATCAATTTAAACTGCAGGCATATCCCCTATAGTTTCAGAGAGGATTATGGAGAGGCCATATCCATCATTGTTAGAATCATTTGAAATAAAATCTCATTAGAATTCATGGTTTCCACAAGCCCGATTTCTGTTCAACAAACTTGTAACTACACAAGCATAAATTTTTTAAGGTAAACTTTTGCTCAATTATTCTCTACCAAAGTTGTTTGCCTGAAGATGGTATGCCAATCTCGTGTGCATCATCTCATCATTCAAGTTCTCTGTGATGTCTACATGAGATGAGGCATGGATTGAAGCTATTTATGACCAATTTTATTTGTATATGTCAAAAGACAGGTTCCATATTC

CDS sequence:

>Potri.013G115800.1[2430 nucleotides] 
ATGAACTTCTGCTTTCTTCTCCTCCTCCAGCTTCCTCTCCTTCTCGTCTTCACGACTACTTCCACAGCAAACATACCACCAGGCTCCTCTCTTTATGCCTCCAACACAAGCCAAACCTGGTCGTCTCCAAACAACACTTTCTTTCTAGGCTTTACCCAAGTGGATCCCACTTCCTACACCGTTTCCATCTCCCATAGTACTGCTGGAGTTTCCATCTGGACAACTGGCAATGTTGTTGCTGGCACTGCCTCTGCAGCTGTCATTGACTACGGTGTAGAATTCCAGTTCCTCCGCAACGGAAATCTCCGTCTCATCAACGGTTCAGGTGCCCCCGTGTGGACCTCCAACACTGGCAACCTTGGTGTCACTTCTGCTTCACTTGATGACACTGGAAACCTGGTACTGAAAGCCGGCAGTATCAATGTCTGGTCCAGTTTTGAAAACCCAACCGACACTCTTGTCCCGTCACAGAATTTAACTGTAAACCAAACTTTGCGATCAGGGGTTTACTCTTTCCGGCTTCTAAGCAGTGGAAATATGAGCTTGACATGGAACGACAGTGTTGTGTACTGGAATCAAGGCTTGAGTTCTGCTTTGAAGTTGACTTCTCCAACCTTGCAGTTGAAGTCAAATGGGATTTTAACTCTTTTAGATGCTGGTTCGCAGATGTCTGTTGCTTTTGGCAATGATTATGGAGAAGGGGGTGAGGTAATGAGATTTTTGAGGTTAGGTAGCGATGGGAATTTGAGAATGTATAGTGGTGGAACTACAACTATGACATGGGCTGCTTTAGCAGATCAGTGTCAGGTTTATGGATACTGTGGAAACATGGGGATCTGTAGTTACAACGAGTCAAGTTTGAGTCCGATTTGCAAATGCCCATCTCTGAATTTTGAGGCTGTGGATGTGAATGATAGTAGAAAAGGGTGTAAGAGAAAAGTGGAGGTTGCGGATTGTGCAGGGAACGTAACAATGCTGGAGTTAAAGCAGACTAAATTTCTTACTTTCCAGGCTCAGCAAATTGTTACCATTGGGATAACAGCTTGCAGAGTGAATTGTTTATCAAGCACTTCTTGCATGGCTTGCACTTCTACATCAGACACATATGTACTATATTGTTACATGAAAAACACACCTGATTTTGTTAGTGGATATCAGGGTCCAGTGCTTCTTAGTACTTCTTATATTAAGGTTTGTGGACCAGTGCAACCAAATCCTTTGCCTTCTGACCAGATTGGTGGAGATAAAAAGTTCCGGGAATCGCGGGGTTGGAAAGTTGGTGTCTTGGTTACAGGCACTATTTGGGGTTTGGCTGCTTTAGTGGGTTTGTTTTGGTGGTTTTGTTGCAAAAATAGTCCCAAATTTGGAGGTGTGTGGGCTCAGTATACACTTCTTGAATATGCCTCAGGTGCTCCCGTTCAGTTTTCATACAAGGACCTGCATCGCTGGACGCAGGGGTTTAAGCATAAACTTGGAGCAGGAGGGTTTGGAGCTGTTTATAGAGGAGTTCTTGCTAACAGAACAGTAGTTGCAGCAAAGCAACTTGAGGGAATTGAACAAGGCGAGAGACAGTTTCGGATGGAGGTTGCAACTATAAGCAGTACTCACCATTTGAATCTGGTTAGATTGATTGGCTTTTGCTCCGAAGGGCGTCACAGGCTTTTAGTATACGAGTTCATGAAAAATGGTTCTTTGGATCATTTCCTGTTCTCGACCGAAGATCAGTCAGGGAAATTATTGAATTGGAAGCGCAGGTTCAACATTGCTCTTGGGACTGCGAGAGGAATCACATATCTTCACGAGGAATGTCGAGATTGCATTGTTCATTGTGATATAAAGCCAGAAAACATTCTCTTGGATGCGAATTTCAATGCCAAGGTGTCTGATTTTGGCCTAGCGAAGCTTATAAGCACAAAGGATCAAAGATACCGGTCCTTGACTACCATTAGAGGCACTAGAGGATATTTGGCACCAGAATGGCTAGCAAACCTCCCAATAACATCAAAATCTGATCTTTACAGTTATGGTATGGTTTTGTTGGAGATTGTGAGTGGGAGGAGGAACTTTGAAGTCTCAGCAGAAATCAATCAAAAGAGGTTCTCAGAGTGGGCTTATGAAGAGTTTGAGAAAGGTAATGTGGAGACAATTGTTGACAAGAGACTTGCTGATCAGGGTGTGGACATGGAACAAGTGATGAGAGCTGTTCAGGTTAGCTTTTGGTGCATTCAGGAGCATCCCTCTCAAAGACCAACAATGGGAAAAGTAGTGCAAATGCTTGAGGGAATTATAGAGATTGCAAGACCACCAGCACCAAAGGCATTGATGAAAGGCTCTACTAGTGGAACAAGTACGAATTTGAGCAGTAAAGATAGTGCTCAGTCTACTTGTGAAGCCTCAGCTCCACCACCCTCTTCATCTTCATCAATTTAA

Transcript sequence:

>Potri.013G115800.1[2973 nucleotides] 
TACGCAATGAATTTTCTCAAGGTTCTAAACCAATTTTTCCCTTGGTTTTTACTTTTCTTTGTTTTGTCTTTATTTTCTTGGAAAATCGAGATAGTCCAACATTAGACATGGGAAAATCCTCACTTCTTTTGCATTTATAAGACATCGAGAAATCAACTAACCACTTGCTCAGCCTCAATTGTGCCCACACAAAAATAAAAAATATAATGAACTTCTGCTTTCTTCTCCTCCTCCAGCTTCCTCTCCTTCTCGTCTTCACGACTACTTCCACAGCAAACATACCACCAGGCTCCTCTCTTTATGCCTCCAACACAAGCCAAACCTGGTCGTCTCCAAACAACACTTTCTTTCTAGGCTTTACCCAAGTGGATCCCACTTCCTACACCGTTTCCATCTCCCATAGTACTGCTGGAGTTTCCATCTGGACAACTGGCAATGTTGTTGCTGGCACTGCCTCTGCAGCTGTCATTGACTACGGTGTAGAATTCCAGTTCCTCCGCAACGGAAATCTCCGTCTCATCAACGGTTCAGGTGCCCCCGTGTGGACCTCCAACACTGGCAACCTTGGTGTCACTTCTGCTTCACTTGATGACACTGGAAACCTGGTACTGAAAGCCGGCAGTATCAATGTCTGGTCCAGTTTTGAAAACCCAACCGACACTCTTGTCCCGTCACAGAATTTAACTGTAAACCAAACTTTGCGATCAGGGGTTTACTCTTTCCGGCTTCTAAGCAGTGGAAATATGAGCTTGACATGGAACGACAGTGTTGTGTACTGGAATCAAGGCTTGAGTTCTGCTTTGAAGTTGACTTCTCCAACCTTGCAGTTGAAGTCAAATGGGATTTTAACTCTTTTAGATGCTGGTTCGCAGATGTCTGTTGCTTTTGGCAATGATTATGGAGAAGGGGGTGAGGTAATGAGATTTTTGAGGTTAGGTAGCGATGGGAATTTGAGAATGTATAGTGGTGGAACTACAACTATGACATGGGCTGCTTTAGCAGATCAGTGTCAGGTTTATGGATACTGTGGAAACATGGGGATCTGTAGTTACAACGAGTCAAGTTTGAGTCCGATTTGCAAATGCCCATCTCTGAATTTTGAGGCTGTGGATGTGAATGATAGTAGAAAAGGGTGTAAGAGAAAAGTGGAGGTTGCGGATTGTGCAGGGAACGTAACAATGCTGGAGTTAAAGCAGACTAAATTTCTTACTTTCCAGGCTCAGCAAATTGTTACCATTGGGATAACAGCTTGCAGAGTGAATTGTTTATCAAGCACTTCTTGCATGGCTTGCACTTCTACATCAGACACATATGTACTATATTGTTACATGAAAAACACACCTGATTTTGTTAGTGGATATCAGGGTCCAGTGCTTCTTAGTACTTCTTATATTAAGGTTTGTGGACCAGTGCAACCAAATCCTTTGCCTTCTGACCAGATTGGTGGAGATAAAAAGTTCCGGGAATCGCGGGGTTGGAAAGTTGGTGTCTTGGTTACAGGCACTATTTGGGGTTTGGCTGCTTTAGTGGGTTTGTTTTGGTGGTTTTGTTGCAAAAATAGTCCCAAATTTGGAGGTGTGTGGGCTCAGTATACACTTCTTGAATATGCCTCAGGTGCTCCCGTTCAGTTTTCATACAAGGACCTGCATCGCTGGACGCAGGGGTTTAAGCATAAACTTGGAGCAGGAGGGTTTGGAGCTGTTTATAGAGGAGTTCTTGCTAACAGAACAGTAGTTGCAGCAAAGCAACTTGAGGGAATTGAACAAGGCGAGAGACAGTTTCGGATGGAGGTTGCAACTATAAGCAGTACTCACCATTTGAATCTGGTTAGATTGATTGGCTTTTGCTCCGAAGGGCGTCACAGGCTTTTAGTATACGAGTTCATGAAAAATGGTTCTTTGGATCATTTCCTGTTCTCGACCGAAGATCAGTCAGGGAAATTATTGAATTGGAAGCGCAGGTTCAACATTGCTCTTGGGACTGCGAGAGGAATCACATATCTTCACGAGGAATGTCGAGATTGCATTGTTCATTGTGATATAAAGCCAGAAAACATTCTCTTGGATGCGAATTTCAATGCCAAGGTGTCTGATTTTGGCCTAGCGAAGCTTATAAGCACAAAGGATCAAAGATACCGGTCCTTGACTACCATTAGAGGCACTAGAGGATATTTGGCACCAGAATGGCTAGCAAACCTCCCAATAACATCAAAATCTGATCTTTACAGTTATGGTATGGTTTTGTTGGAGATTGTGAGTGGGAGGAGGAACTTTGAAGTCTCAGCAGAAATCAATCAAAAGAGGTTCTCAGAGTGGGCTTATGAAGAGTTTGAGAAAGGTAATGTGGAGACAATTGTTGACAAGAGACTTGCTGATCAGGGTGTGGACATGGAACAAGTGATGAGAGCTGTTCAGGTTAGCTTTTGGTGCATTCAGGAGCATCCCTCTCAAAGACCAACAATGGGAAAAGTAGTGCAAATGCTTGAGGGAATTATAGAGATTGCAAGACCACCAGCACCAAAGGCATTGATGAAAGGCTCTACTAGTGGAACAAGTACGAATTTGAGCAGTAAAGATAGTGCTCAGTCTACTTGTGAAGCCTCAGCTCCACCACCCTCTTCATCTTCATCAATTTAAACTGCAGGCATATCCCCTATAGTTTCAGAGAGGATTATGGAGAGGCCATATCCATCATTGTTAGAATCATTTGAAATAAAATCTCATTAGAATTCATGGTTTCCACAAGCCCGATTTCTGTTCAACAAACTTGTAACTACACAAGCATAAATTTTTTAAGGTAAACTTTTGCTCAATTATTCTCTACCAAAGTTGTTTGCCTGAAGATGGTATGCCAATCTCGTGTGCATCATCTCATCATTCAAGTTCTCTGTGATGTCTACATGAGATGAGGCATGGATTGAAGCTATTTATGACCAATTTTATTTGTATATGTCAAAAGACAGGTTCCATATTC

Protein sequence:

>Potri.013G115800.1[809 residues] 
MNFCFLLLLQLPLLLVFTTTSTANIPPGSSLYASNTSQTWSSPNNTFFLGFTQVDPTSYTVSISHSTAGVSIWTTGNVVAGTASAAVIDYGVEFQFLRNGNLRLINGSGAPVWTSNTGNLGVTSASLDDTGNLVLKAGSINVWSSFENPTDTLVPSQNLTVNQTLRSGVYSFRLLSSGNMSLTWNDSVVYWNQGLSSALKLTSPTLQLKSNGILTLLDAGSQMSVAFGNDYGEGGEVMRFLRLGSDGNLRMYSGGTTTMTWAALADQCQVYGYCGNMGICSYNESSLSPICKCPSLNFEAVDVNDSRKGCKRKVEVADCAGNVTMLELKQTKFLTFQAQQIVTIGITACRVNCLSSTSCMACTSTSDTYVLYCYMKNTPDFVSGYQGPVLLSTSYIKVCGPVQPNPLPSDQIGGDKKFRESRGWKVGVLVTGTIWGLAALVGLFWWFCCKNSPKFGGVWAQYTLLEYASGAPVQFSYKDLHRWTQGFKHKLGAGGFGAVYRGVLANRTVVAAKQLEGIEQGERQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNGSLDHFLFSTEDQSGKLLNWKRRFNIALGTARGITYLHEECRDCIVHCDIKPENILLDANFNAKVSDFGLAKLISTKDQRYRSLTTIRGTRGYLAPEWLANLPITSKSDLYSYGMVLLEIVSGRRNFEVSAEINQKRFSEWAYEEFEKGNVETIVDKRLADQGVDMEQVMRAVQVSFWCIQEHPSQRPTMGKVVQMLEGIIEIARPPAPKALMKGSTSGTSTNLSSKDSAQSTCEASAPPPSSSSSI

GO ID	Description
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PFAM ID
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PANTHER ID
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KO ID
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EC ID
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KOG ID
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PlantGenIE GeneLists

Species Name	Genes
Amborella trichopoda	scaffold00017.63; scaffold00017.67; scaffold00103.84; scaffold00068.90;
Oryza sativa ssp. japonica	OS03G62180;
Picea abies	MA_78595g0010; MA_5147g0010; MA_895977g0010; MA_7917g0010; MA_10426650g0010; MA_132342g0010; MA_91618g0010; MA_208216g0010; MA_10433041g0010; MA_202714g0010; MA_69585g0010; MA_126451g0020;
Pinus taeda	PITA_000010770-RA; PITA_000057028-RA; PITA_000026418-RA; PITA_000039323-RA; PITA_000010766-RA; PITA_000070393-RA; PITA_000000064-RA; PITA_000092193-RA; PITA_000076221-RA; PITA_000038188-RA; PITA_000068370-RA; PITA_000035863-RA; PITA_000075905-RA; PITA_000002882-RA; PITA_000071608-RA; PITA_000010764-RA; PITA_000083463-RA; PITA_000062713-RA; PITA_000082318-RA; PITA_000086506-RA; PITA_000046598-RA; PITA_000077721-RA; PITA_000026666-RA; PITA_000051097-RA; PITA_000032910-RA; PITA_000083464-RA; PITA_000047189-RA; PITA_000086505-RA; PITA_000047190-RA; PITA_000082900-RA; PITA_000050875-RA; PITA_000026667-RA;
Populus trichocarpa	Potri.013G115700; Potri.019G086200; Potri.019G086400; Potri.013G115800; Potri.019G086300; Potri.001G006100;
Selaginella moellendorffii	SM00070G01740; SM00002G02410;
Vitis vinifera	VV18G16760;
Zea mays	ZM01G58990;

Methods of the gene family analysis can be found here.

No submitted publication available for this gene(Potri.013G115800).

Map Image:

Primary links

Populus trichocarpa gene Potri.013G115800 19

Populus trichocarpa gene Potri.013G115800
19