Gene | popgenie.org

Populus trichocarpa gene Potri.002G021200
1

Basic Information
Sequence
Functional Information
Expression Overview
Gene Family
Publications
Community Annotation

Locus:	Potri.002G021200
Transcript name:	Potri.002G021200.1
Protein name:	27020943_peptide
PAC Transcript ID :	27020943
Chromosome:	Chr02
Start position:	1282486
End position:	1283253
Synonyms:	fgenesh4_pg.C_LG_II000202;POPTR_0002s02280;
Description:
Best BLAST Aspen:	Potrs000326g37319.1
Best BLAST ATG:
Other transcripts at this locus:
Map Detail Image:

Legend: 5'UTR CDS 3'UTR

Genomic Sequence (- strand) upstream: downstream:

>Chr02:1282486-1283253[768 nucleotides] 
ATGGGGGTCTCCAAGTCACGCAAATATTGTATTCTTCTCTATGTTTTTCTCATCTTCCTCGTTTCTTTTATTTGCAACGCACAAGCTTTATCAACAGTTGCAGATCAACATGTCCTAGACGTGCCACCAAATGATGAAAATACACCGGCTCGTGCTTCTCCTCCGGTTGCTGCTCCTATTCTAAACAACGTGCCTCCTTTTGGAAAACCATTAAGCAACCAAGGGCAACAGTCTCCACTGGGTTACCGGCAGCAACAAGAGCTGAATAATCCACCGCAAGACATTAATCAGCCTCGGTCAAGCCTTACTCAACCACTTTCTTCTCTGAACCAGCCCCTCTCAGGCACTAGTGTGCCCTTTTCTGCTTTGAATCAGCCTTTCGGGGCCAGTGATTCCCAAAACTTACTGAGAAACCTTCCTTTTGCCAGTGGAGTTTCTGTGGAGAAAACCTCTACTGATCTGGGAGTCGTTTTATTTCCCCTCATTACATTGATGGCTACGCTCTAGTTTGCCAGTATAGCCGATTTAGGACCATCATCAGCCAATCTGCCTTCCAATCTTCCATCCCCTTCTCGGCGGTCGGCAACTTCCATGTTACCTTTTATTTTTTTAAGTGATCGTGTTCGTGTTCATGTTCATGTTCATGTGAGGATGGTTCCACACCACACCAGTGTGGAGAAACATCTGAAACCTGTACCTTAATATGATGATTTGAACATATTAAAATATGTTCTCTTCATCTATGTTTTATAGATGTTATTTGTATTT

CDS sequence:

>Potri.002G021200.1[507 nucleotides] 
ATGGGGGTCTCCAAGTCACGCAAATATTGTATTCTTCTCTATGTTTTTCTCATCTTCCTCGTTTCTTTTATTTGCAACGCACAAGCTTTATCAACAGTTGCAGATCAACATGTCCTAGACGTGCCACCAAATGATGAAAATACACCGGCTCGTGCTTCTCCTCCGGTTGCTGCTCCTATTCTAAACAACGTGCCTCCTTTTGGAAAACCATTAAGCAACCAAGGGCAACAGTCTCCACTGGGTTACCGGCAGCAACAAGAGCTGAATAATCCACCGCAAGACATTAATCAGCCTCGGTCAAGCCTTACTCAACCACTTTCTTCTCTGAACCAGCCCCTCTCAGGCACTAGTGTGCCCTTTTCTGCTTTGAATCAGCCTTTCGGGGCCAGTGATTCCCAAAACTTACTGAGAAACCTTCCTTTTGCCAGTGGAGTTTCTGTGGAGAAAACCTCTACTGATCTGGGAGTCGTTTTATTTCCCCTCATTACATTGATGGCTACGCTCTAG

Transcript sequence:

>Potri.002G021200.1[768 nucleotides] 
ATGGGGGTCTCCAAGTCACGCAAATATTGTATTCTTCTCTATGTTTTTCTCATCTTCCTCGTTTCTTTTATTTGCAACGCACAAGCTTTATCAACAGTTGCAGATCAACATGTCCTAGACGTGCCACCAAATGATGAAAATACACCGGCTCGTGCTTCTCCTCCGGTTGCTGCTCCTATTCTAAACAACGTGCCTCCTTTTGGAAAACCATTAAGCAACCAAGGGCAACAGTCTCCACTGGGTTACCGGCAGCAACAAGAGCTGAATAATCCACCGCAAGACATTAATCAGCCTCGGTCAAGCCTTACTCAACCACTTTCTTCTCTGAACCAGCCCCTCTCAGGCACTAGTGTGCCCTTTTCTGCTTTGAATCAGCCTTTCGGGGCCAGTGATTCCCAAAACTTACTGAGAAACCTTCCTTTTGCCAGTGGAGTTTCTGTGGAGAAAACCTCTACTGATCTGGGAGTCGTTTTATTTCCCCTCATTACATTGATGGCTACGCTCTAGTTTGCCAGTATAGCCGATTTAGGACCATCATCAGCCAATCTGCCTTCCAATCTTCCATCCCCTTCTCGGCGGTCGGCAACTTCCATGTTACCTTTTATTTTTTTAAGTGATCGTGTTCGTGTTCATGTTCATGTTCATGTGAGGATGGTTCCACACCACACCAGTGTGGAGAAACATCTGAAACCTGTACCTTAATATGATGATTTGAACATATTAAAATATGTTCTCTTCATCTATGTTTTATAGATGTTATTTGTATTT

Protein sequence:

>Potri.002G021200.1[168 residues] 
MGVSKSRKYCILLYVFLIFLVSFICNAQALSTVADQHVLDVPPNDENTPARASPPVAAPILNNVPPFGKPLSNQGQQSPLGYRQQQELNNPPQDINQPRSSLTQPLSSLNQPLSGTSVPFSALNQPFGASDSQNLLRNLPFASGVSVEKTSTDLGVVLFPLITLMATL

GO ID	Description
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PFAM ID
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PANTHER ID
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KO ID
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EC ID
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KOG ID
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PlantGenIE GeneLists

Species Name	Genes
Amborella trichopoda	scaffold00041.152;
Picea abies	MA_36566g0010; MA_142765g0010; MA_156299g0030; MA_26909g0010; MA_5831221g0010; MA_156299g0010; MA_25658g0010; MA_9418976g0010; MA_1056310g0010; MA_142765g0020; MA_156299g0020;
Pinus taeda	PITA_000010564-RA; PITA_000031311-RA; PITA_000009014-RA; PITA_000095178-RA; PITA_000065039-RA; PITA_000050620-RA; PITA_000050619-RA; PITA_000050621-RA; PITA_000095433-RA;
Populus trichocarpa	Potri.002G021200;
Vitis vinifera	VV18G10710;

Methods of the gene family analysis can be found here.

No submitted publication available for this gene(Potri.002G021200).

Map Image:

Primary links

Populus trichocarpa gene Potri.002G021200 1

Populus trichocarpa gene Potri.002G021200
1