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Welcome to v3 PopGenIE: The Populus Genome Integrative Explorer

× Click here to of PopGenIE basic features.
  • Select Species
  • Select Workflow
  • Create Workflow

Select Species

Select Arabidopsis, Poplar or Spruce to start.

Select Workflow

There are currently five available workflows.

Automation made simple

Results are generated based on previous selections.

Latest News:
Old versions of PopGenIE PopGenIE v2
PopGenIE v3
Move ePlant to exImage-14/3/2014
Updated In Silico PCR-18/02/2014
Added GBrowse info-28/01/2014
Updated sequences- 22/01/2014
Added new help page- 21/01/2014
Updated exNorthern- 20/01/2014

New Version
Welcome to the updated version of PopGenIE. Be aware, this is still a work in progress and there *are* currently bugs and gaps - but we will be fixing them over the coming weeks. In particular, there are currently no help pages to guide new users. However, most tools are now useable and up to date to the v3.0 assembly. We are a small team of people, so please be patient.

We intend for PopGenIE to facilitate the exploration of genes and gene function in *Populus* using a set of integrated tools providing access to as broad a base of community, publicly accessible genomics, genetics, and sequence data as possible. Our aim is to complement the resource available at Phytozome and to offer a resource that is more oriented towards functional genomics and community data provision.
If PopGenIE assists you in developing new knowledge (for example by exploring the potential functional role of a gene) and actively contributes to publications please Cite us as this helps justify continued development. Please also remember to cite the original source of data where relevant, for example the experiments represented in the ePlant and eFP tools.

Data Submission
We would welcome the submission of data to any of the PopGenIE tools. Please contact us  and we will discuss how to best integrate your data set. We intend this to be a community resource that will act as a repository for *processed, curated* data and hope that it will grow and expand through community support. All community support will be fully and visibly acknowledged. Data submission and integration is an area we will work to automate and improve in the coming period.

Feel free to contact us with comments, suggestions or questions or use the Forum. If you are interested in getting involved in the development of the resource you would be most welcome!


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